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PennTURBO Documentation

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mapped_orders.csv

Add Column

Add Node/Literal

Literal Node: mapped_orders.csv 20180329 via wes_pds_enc__med_order.csv

Literal Type: NA
Language: NA
isUri: false

PyTransforms

prescription_uri

From column: PK_ORDER_MED_ID

import uuid
temp = uuid.uuid4().hex
return "prescription/" + temp

enc_uri

From column: RAWTOHEX.FK_PATIENT_ENCOUNTER_ID.

encIdVal = getValue("RAWTOHEX.FK_PATIENT_ENCOUNTER_ID.")
return "hcEncounter/" + encIdVal

encoutner_reg_uri_string

From column: RAWTOHEX.FK_PATIENT_ENCOUNTER_ID.

return("http://transformunify.org/ontologies/TURBO_0000440")

d.full_s

From column: d.full_s

temp =  getValue("d.full_s")
if temp != "NA":
    return(temp)

#return getValue("d.full_s")

Selections

Semantic Types

Column Property Class
ORDER_NAME turbo:TURBO_0005611 obo:PDRO_00000241
PK_ORDER_MED_ID turbo:TURBO_0005601 obo:PDRO_00000241
RAWTOHEX.FK_PATIENT_ENCOUNTER_ID. turbo:TURBO_0000648 obo:OGMS_00000971
d.full_s turbo:TURBO_0005612 obo:PDRO_00000241
enc_uri uri obo:OGMS_00000971
encoutner_reg_uri_string turbo:TURBO_0000650 obo:OGMS_00000971
prescription_uri uri obo:PDRO_00000241
From Property To
obo:OGMS_00000971 obo:RO_0002234 obo:PDRO_00000241
obo:OGMS_00000971 turbo:TURBO_0000643 mapped_orders.csv 20180329 via wes_pds_enc__med_order.csv